About: Novel NGS Pipeline for Virus Discovery from a Wide Spectrum of Hosts and Sample Types

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

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type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Novel NGS Pipeline for Virus Discovery from a Wide Spectrum of Hosts and Sample Types
Creator	Vapalahti, Olli Smura, Teemu Jääskeläinen, Anne Kant, Ravi Sironen, Tarja »more»
source	BioRxiv
abstract	The study of the microbiome data holds great potential for elucidating the biological and metabolic functioning of living organisms and their role in the environment. Metagenomic analyses have shown that humans, along with e.g. domestic animals, wildlife and arthropods, are colonized by an immense community of viruses. The current Coronavirus pandemic (COVID-19) heightens the need to rapidly detect previously unknown viruses in an unbiased way. The increasing availability of metagenomic data in this era of next-generation sequencing (NGS), along with increasingly affordable sequencing technologies, highlight the need for reliable and comprehensive methods to manage such data. In this article, we present a novel stand-alone pipeline called LAZYPIPE for identifying both previously known and novel viruses in host-associated or environmental samples and give examples of virus discovery based on it. LAZYPIPE is a Unix-based pipeline for automated assembling and taxonomic profiling of NGS libraries implemented as a collection of C++, Perl, and R scripts.
has issue date	2020-05-08(xsd:dateTime)
bibo:doi	10.1101/2020.05.07.082107
has license	biorxiv
sha1sum (hex)	2a13d7555c9b704a6603a715c112229dbf03a2e8
schema:url	https://doi.org/10.1101/2020.05.07.082107
resource representing a document's title	Novel NGS Pipeline for Virus Discovery from a Wide Spectrum of Hosts and Sample Types
schema:publication	bioRxiv
resource representing a document's body	covid:2a13d7555c9b704a6603a715c112229dbf03a2e8#body_text
is schema:about of	named entity 'scripts' named entity 'discovery' named entity 'virus' named entity 'metagenomic' named entity 'availability' »more»

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